BIOLOGICAL DATA MANAGING: A OPPORTUNITY FOR MOLECULAR BIOLOGY AND PHARMACEUTICALS.
It is demonstrated how bdbms enables biologists to manipulate their databases, annotations, and derivation information in a unified database system using the Purdue Ionomics Information Management System (PiiMS) as a case study.
Abstract
Database management system (DBMS) A set of computer programs that control the creation, maintenance, and utilization of the databases of an organization DBMS uses application development: developing information systems by a process of investigation, analysis, design, implementation, and maintenance. Also called systems development life cycle (SDLC), information systems development. We demonstrate Biological Data Base Management (bdbm), an extensible database engine for biological databases. Bdbms started on the observation that database technology has not kept pace with the specific requirements of biological databases and that several needed key functionalities are not supported at the engine level. While bdbms aims at supporting several of these functionalities, this demo focuses on: (1) Annotation and provenance management including storage, indexing, querying, and propagation, (2) Local dependency tracking of dependencies and derivations among data items, and (3) Update authorization to support data curation. We demonstrate how bdbms enables biologists to manipulate their databases, annotations, and derivation information in a unified database system using the Purdue Ionomics Information Management System (PiiMS) as a case study.