A strategy of DNA sequencing employing computer programs
Nucleic Acids ResearchPublished 1 January 1979Open access
Rodger Staden
Citations394
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TL;DR
Computer programs that can be used to order both sequence gel readings and clones are described and a method of coding for uncertainties in gel readings is described.
Abstract
With modern fast sequencing techniques and suitable computer programs it is now possible to sequence whole genomes without the need of restriction maps. This paper describes computer programs that can be used to order both sequence gel readings and clones. A method of coding for uncertainties in gel readings is described. These programs are available on request.
Keywords
Biochemistry, Genetics and Molecular Biology
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A new method for determining nucleotide sequences in DNA is described, which makes use of the 2',3'-dideoxy and arabinon nucleoside analogues of the normal deoxynucleoside triphosphates, which act as specific chain-terminating inhibitors of DNA polymerase.
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NatureNucleotide sequence of bacteriophage G4 DNA
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There is less sequence similarity between the untranslated intergenic regions of G4 and ΦX174, but despite this the sequences of the J/F, F/G and H/A untrans translated spaces in both genomes have similar sized hairpin loops, which may be related to their function.
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This paper describes simple programs designed specifically for use by people with little or no computer experience for use on small computers and provide facilities for storage, editing and analysis of both DNA and amino acid sequences.
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183 Citations1978Rodger Staden
The facilities of this basic set of programs for sequence data handling and analysis by computer are extended by further easily used programs.
