Interpreting Dynamically-Averaged Scalar Couplings in Proteins

This work presents a method to derive scalar three-bond coupling constants that uses ensembles of conformations determined through dynamic-ensemble refinement – a method that provides structural ensembled that simultaneously represent both the structure and the associated dynamics of a protein.

Abstract

The experimental determination of scalar three-bond coupling constants represents a powerful method to probe both the structure and dynamics of proteins. The detailed structural interpretation of such coupling constants is usually based on Karplus relationships, which allow the measured couplings to be related to the torsion angles of the molecules. As the measured couplings are sensitive to thermal fluctuations, the parameters in the Karplus relationships are better derived from ensembles representing the distributions of dihedral angles present in solution, rather than from single conformations. We present a method to derive such parameters that uses ensembles of conformations determined through dynamic-ensemble refinement--a method that provides structural ensembles that simultaneously represent both the structure and the associated dynamics of a protein.