Empirical Bayes Gibbs sampling
BiostatisticsPublished 1 December 2001Open access
George Casella
Citations155
SJR quartileQ1
SJR score1.37
SNIP1.34
Generate an AI Snapshot to get a quick, structured summary of this paper.
Study Snapshot
ObjectiveStudy objective
MethodsResearch methodology
PopulationPopulation studied
Sample sizeSample sizes
OutcomesStudy outcomes here
ResultsStudy results comes here
LimitationsResearch study limitations comes here
A concise AI-generated summary of the paper will appear here once you click Generate AI Snapshot.
Abstract
The wide applicability of Gibbs sampling has increased the use of more complex and multi-level hierarchical models. To use these models entails dealing with hyperparameters in the deeper levels of a hierarchy. There are three typical methods for dealing with these hyperparameters: specify them, estimate them, or use a 'flat' prior. Each of these strategies has its own associated problems. In this paper, using an empirical Bayes approach, we show how the hyperparameters can be estimated in a way that is both computationally feasible and statistically valid.
Keywords
Computer ScienceMathematics
IEEE Transactions on Pattern Analysis and Machine IntelligenceStochastic Relaxation, Gibbs Distributions, and the Bayesian Restoration of Images
17,980 Citations1984Stuart Geman, Donald Geman
The analogy between images and statistical mechanics systems is made and the analogous operation under the posterior distribution yields the maximum a posteriori (MAP) estimate of the image given the degraded observations, creating a highly parallel ``relaxation'' algorithm for MAP estimation.
Journal of the American Statistical AssociationSampling-Based Approaches to Calculating Marginal Densities
6,616 Citations1990Alan E. Gelfand, A. F. M. Smith
Stochastic substitution, the Gibbs sampler, and the sampling-importance-resampling algorithm can be viewed as three alternative sampling- (or Monte Carlo-) based approaches to the calculation of numerical estimates of marginal probability distributions.
TechnometricsMonte Carlo Statistical Methods
5,612 Citations2000Hoon Kim, Christian P. Robert +1 more
Journal of the American Statistical AssociationGeneralized Linear Models (2nd ed.).
4,940 Citations1993Terry M. Therneau, Peter McCullagh +1 more
A class of statistical models that generalizes classical linear models-extending them to include many other models useful in statistical analysis, of particular interest for statisticians in medicine, biology, agriculture, social science, and engineering.
The Annals of StatisticsMarkov Chains for Exploring Posterior Distributions
3,472 Citations1994Luke Tierney
This paper outlines some of the basic methods and strategies of Markov chain methods and discusses some related theoretical and practical issues.
Springer texts in statisticsMonte Carlo Statistical Methods
2,245 Citations1999Christian P. Robert, George Casella
Journal of the American Statistical AssociationAccurate Approximations for Posterior Moments and Marginal Densities
2,003 Citations1986Luke Tierney, Joseph B. Kadane
Journal of the Royal Statistical Society Series C (Applied Statistics)Generalized Linear Models, 2nd Edn.
1,520 Citations1990P. J. Cheek, P. McCullagh +1 more
Journal of the American Statistical AssociationSampling-Based Approaches to Calculating Marginal Densities
1,519 Citations1990Alan E. Gelfand, A. F. M. Smith
Journal of the American Statistical AssociationParametric Empirical Bayes Inference: Theory and Applications
1,393 Citations1983Carl N. Morris
Journal of the American Statistical AssociationThe Selection of Prior Distributions by Formal Rules
1,214 Citations1996Robert E. Kass, Larry Wasserman
Journal of the American Statistical AssociationThe Intrinsic Bayes Factor for Model Selection and Prediction
960 Citations1996James O. Berger, Luis R. Pericchi
This article introduces a new criterion called the intrinsic Bayes factor, which is fully automatic in the sense of requiring only standard noninformative priors for its computation and yet seems to correspond to very reasonable actual Bayes factors.
Journal of the Royal Statistical Society Series B (Statistical Methodology)Fractional Bayes Factors for Model Comparison
687 Citations1995Anthony O’Hagan
Property of partial Bayes factors are discussed, particularly in the context of weak prior information, and they are found to have advantages over other proposed methods of model comparison.
The Annals of StatisticsOn the Consistency of Bayes Estimates
616 Citations1986Persi Diaconis, David A. Freedman
The Annals of Mathematical StatisticsThe Empirical Bayes Approach to Statistical Decision Problems
607 Citations1964Herbert Robbins
Journal of the Royal Statistical Society Series B (Statistical Methodology)Maximizing Generalized Linear Mixed Model Likelihoods With an Automated Monte Carlo EM Algorithm
557 Citations1999James G. Booth, James P. Hobert
Two new implementations of the EM algorithm are proposed for maximum likelihood fitting of generalized linear mixed models using random sampling to construct Monte Carlo approximations at the E‐step, and can be considerably more efficient than those based on Markov chain Monte Carlo algorithms.
Journal of the American Statistical AssociationApproximate Bayesian Inference in Conditionally Independent Hierarchical Models (Parametric Empirical Bayes Models)
450 Citations1989Robert E. Kass, Duane Steffey
Journal of the American Statistical AssociationAccurate Approximations for Posterior Moments and Marginal Densities
419 Citations1986Luke Tierney, Joseph B. Kadane
Journal of the American Statistical AssociationThe Effect of Improper Priors on Gibbs Sampling in Hierarchical Linear Mixed Models
418 Citations1996James P. Hobert, George Casella
The Gibbs sampler may be used to explore the posterior distribution without ever having established propriety of the posterior, showing that the output from a Gibbs chain corresponding to an improper posterior may appear perfectly reasonable.
A Probability Path
391 Citations1999Sidney I. Resnick
Journal of the American Statistical AssociationThe Intrinsic Bayes Factor for Model Selection and Prediction
242 Citations1996James O. Berger, Luis R. Pericchi
Journal of Computational and Graphical StatisticsImplementations of the Monte Carlo EM Algorithm
237 Citations2001Richard A. Levine, George Casella
The Monte Carlo EM (MCEM) algorithm is a modification of the EM algorithm where the expectation in the E-step is computed numerically through Monte Carlo simulations and an automated rule is applied for increasing the Monte Carlo sample size whenthe Monte Carlo error overwhelms the EM estimate at any given iteration.
RePEc: Research Papers in EconomicsDirect calculation of the information matrix via the EM
212 CitationsDavid Oakes
Journal of the Royal Statistical Society Series B (Statistical Methodology)Direct Calculation of the Information Matrix via the EM Algorithm
140 Citations1999David Oakes
BiometricsGeneralized Linear Models with Random Effects; Salamander Mating Revisited
138 Citations1992Mohammad Rezaul Karim, Scott L. Zeger
This paper casts the problem in a Bayesian framework and uses a Monte Carlo method, the Gibbs sampler, to avoid current computational limitations in regression methodology for crossed designs.
Journal of the American Statistical AssociationSome Remarks on Noninformative Priors
128 Citations1995Gauri Sankar Datta, Malay Ghosh
Journal of the Royal Statistical Society Series B (Statistical Methodology)Asymptotic Inference for Mixture Models by Using Data-Dependent Priors
126 Citations2000L. H. Wasserman
Journal of the American Statistical AssociationApproximate Bayesian Inference in Conditionally Independent Hierarchical Models (Parametric Empirical Bayes Models)
93 Citations1989Robert E. Kass, Duane Steffey
BiometrikaA note on the existence of the posterior distribution for a class of mixed models for binomial responses
66 Citations1995Ranjini Natarajan, Charles E. McCulloch
Journal of the American Statistical AssociationInformation about Hyperparameters in Hierarchical Models
54 Citations1981Prem K. Goel, Morris H. DeGroot
It is shown that for many measures of information, the gain in information decreases as one moves to higher levels of hyperparameters.
Journal of Statistical Computation and SimulationConvergence controls for MCMC algorithms, with applications to hidden markov chains
41 Citations1999Christian P. Robert, Tobias Rydén +1 more
This paper proposes a series of online controls, which rely on classical non-parametric tests, to evaluate independence from the start-up distribution, stability of the Markov chain, and asymptotic normality.
Journal of the American Statistical AssociationEmpirical Bayes Methods for Combining Likelihoods: Comment
31 Citations1996Alan E. Gelfand
Journal of the American Statistical AssociationHierarchical Models: A Current Computational Perspective
25 Citations2000James P. Hobert
H Hierarchical Models: A Current Computational Perspective is presented, with a focus on the role of Bayesian inference in the development of Hierarchy-like models.
The Annals of StatisticsOn the Consistency of Posterior Mixtures and Its Applications
18 Citations1991Somnath Datta
It is shown that the Bayes empirical Bayes rules are asymptotically optimal, and this result implies that 6i is consistent in probability.
BiometrikaA Note on the Existence of the Posterior Distribution for a Class of Mixed Models for Binomial Responses
9 Citations1995Ranjini Natarajan, Charles E. McCulloch
RePEc: Research Papers in EconomicsConvergence Controls for MCMC Algorithms with Applications to Hidden Markov Chains
2 Citations1998Christian P. Robert, Tobias Rydèn +1 more
